Deep Learning Scientist, Protein Design
: Job Details :


Deep Learning Scientist, Protein Design

Aikium

Location: Berkeley,CA, USA

Date: 2025-01-09T04:23:13Z

Job Description:

Computational Protein Design Virtuoso Wanted

Aikium - Where Passion Meets Purpose

Aikium Inc. is revolutionizing AI-driven protein engineering, shifting the paradigm from cherry-picked top-10 evaluation to ultra-large design-library screening. Our groundbreaking Yotta Display platform enables the synthesis and experimental screening of trillion-protein libraries, pushing the boundaries of what's possible in protein design. Our internal pipelines focus on SeqRs, our patented non-antibody disorder binding protein scaffold for targeting multi-pass membrane proteins. Expansion to several scaffolds and diverse targets is under way to support our growing internal pipeline and numerous external partnerships.

We're seeking a visionary leader to spearhead the development and application of cutting-edge deep learning approaches for engineering all therapeutically relevant protein scaffolds.

Your Expertise

Advanced Qualifications:

  • Ph.D. in the computational sciences
  • 2+ years of hands-on deep learning experience in protein engineering / design
  • Proven track record in developing one or more of the following:
  • Large Language Models over biological sequence data
  • Geometric deep learning over protein structures
  • Diffusion-based models for any class of biomolecules
  • Solid foundations:

    • Comprehensive knowledge of computational methods, toolkits, and databases in protein sciences
    • Strong understanding of therapeutic protein development objectives
    • Familiarity with traditional bioinformatics, Next Generation Sequencing and molecular dynamics simulation
    • Exposure to data from different types of experiments for prosecuting protein-protein interactions

    Special Attributes:

    • Critical thinking and advanced analytical skills
    • Passion for tackling complex, seemingly intractable problems
    • Pragmatic approach to meeting milestones and getting things done!

    Why Aikium?

    • Be an early driver at a field-defining startup chasing the hard problems
    • Access to one-of-a-kind synthetic biology platform that can generate labeled data at scale
    • Founded by an experienced and grounded multi-disciplinary team
    • Competitive compensation with generous stock options
    Apply Now!

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